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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g055910.2 | ||||||||
Common Name | MTR_6g055910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 24606.3 Da PI: 4.6873 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 3 | 44 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ E++++ ++++lG++ W+ Ia+ ++ gRt++++k++w++yl Medtr6g055910.2 3 SKHEEDKIMTLHQMLGNK-WSQIAQQLP-GRTDNEIKNYWHSYL 44 689***************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.662 | 1 | 48 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.8E-13 | 3 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-13 | 3 | 44 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 2.7E-8 | 3 | 46 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-21 | 3 | 45 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.98E-10 | 3 | 44 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MLSKHEEDKI MTLHQMLGNK WSQIAQQLPG RTDNEIKNYW HSYLKKKEVK SKDIESHTQI 60 QYASSSSDTM NSLLSTQKYA IQDPKYVLPE NINKSTATTH SDQSISKNYN TANEVCHSSL 120 PKLLFSEWLS LDQVNGCNSL NSDDSLVLKN GYDQNLIFQE NVIQMPEGQF GEEFHDSLIQ 180 NLENDVYYSQ IQMSNQVDEN ELVHYLNNDV MYV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452392.1 | 1e-156 | myb transcription factor | ||||
Refseq | XP_013452393.1 | 1e-156 | myb transcription factor | ||||
TrEMBL | A0A072UKS6 | 1e-156 | A0A072UKS6_MEDTR; Myb transcription factor | ||||
TrEMBL | A0A072UAI1 | 1e-156 | A0A072UAI1_MEDTR; Myb transcription factor | ||||
STRING | GLYMA16G31280.1 | 1e-82 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 5e-22 | myb domain protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g055910.2 |
Entrez Gene | 11440676 |
Publications ? help Back to Top | |||
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